Stem-loop sequence dre-mir-203b

Accession

MI0002041 (change log)

Description

Danio rerio miR-203b stem-loop

Gene family

MIPF0000108; mir-203

Literature search

5 open access papers mention dre-mir-203b
(9 sentences)

Stem-loop

       - -    gc           c    g    a     cuu 
5' uccu c uuug  cgagugguucu aaca uuca caguu   u
   |||| | ||||  ||||||||||| |||| |||| |||||    
3' agga g agac  guucaccagga uugu aagu guuag   u
       a c    ua           c    a    -     uag 

Deep sequencing

417671 reads, 2.3e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr20: 27405878-27405962 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir203b
• EntrezGene:mir203b
• RNAcentral:URS000075D7C5_7955
• miRBase Tracker:MI0002041

Mature sequence dre-miR-203b-5p

• Accession: MIMAT0003407
• Previous IDs: dre-miR-203b*
• Sequence: 14 - agugguucucaacaguucaaca - 35
• Deep sequencing: 4301 reads, 10 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075E53B_7955

Mature sequence dre-miR-203b-3p

• Accession: MIMAT0001865
• Previous IDs: dre-miR-203b
• Sequence: 51 - gugaaauguucaggaccacuug - 72
• Deep sequencing: 413367 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075A12D_7955
• Predicted targets:
  • TargetScanFish:dre-miR-203b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).