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miRBase |
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Stem-loop sequence dre-mir-143 |
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Accession | MI0002007 (change log) | ||||||
Description | Danio rerio miR-143 stem-loop | ||||||
Gene family | MIPF0000094; mir-143 | ||||||
Literature search |
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7 open access papers mention dre-mir-143 | ||||||
Stem-loop |
u - --c gg c g g u - aa 5' ga cu acagu gucu cccg g ugcagugcu caucuc gg uc c || || ||||| |||| |||| | ||||||||| |||||| || || 3' cu ga uguca cagg gggc c augucacga guagag cu ag u c c caa -a u g a u g gg |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
The cloned mature miR-143 sequence always appears to be 22nt in length, modified by the addition of a 3' U residue not found in the genomic sequence [1]. |
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence dre-miR-143 |
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Accession | MIMAT0001840 |
Sequence |
57 - ugagaugaagcacuguagcuc - 77 |
Deep sequencing | 73255 reads, 11 experiments |
Evidence | experimental; cloned [1] |
Predicted targets |
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References |
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1 |
PMID:15937218
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
Genes Dev. 19:1288-1293(2005).
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