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miRBase |
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Stem-loop sequence dre-mir-130c-1 |
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Accession | MI0001987 (change log) | |||||
Description | Danio rerio miR-130c-1 stem-loop | |||||
Gene family | MIPF0000034; mir-130 | |||||
Literature search |
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5 open access papers mention dre-mir-130c-1 | |||||
Stem-loop |
uc uac uauu ca --- u uc a ggcca 5' gggagagg ug gguga gac uguuuugu cca ugcccuuuu uguuguacu cu a |||||||| || ||||| ||| |||||||| ||| ||||||||| ||||||||| || u 3' uccucucc ac ccacu cug acaagaua ggu acgggaaaa auaacguga ga c -c ucu --uc ag guc u uu c gaaga |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence dre-miR-130c-5p |
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Accession | MIMAT0031969 |
Sequence |
43 - gcccuuuuucuguuguacuacu - 64 |
Deep sequencing | 573 reads, 9 experiments |
Evidence | not experimental |
Mature sequence dre-miR-130c-3p |
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Accession | MIMAT0001828 |
Previous IDs | dre-miR-130c |
Sequence |
80 - cagugcaauauuaaaagggcau - 101 |
Deep sequencing | 80600 reads, 11 experiments |
Evidence | experimental; cloned [1] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:15937218
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
Genes Dev. 19:1288-1293(2005).
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