Stem-loop sequence dre-mir-125b-1

AccessionMI0001975 (change log)
DescriptionDanio rerio miR-125b-1 stem-loop
Gene family MIPF0000033; mir-10
Literature search

24 open access papers mention dre-mir-125b-1
(186 sentences)

Stem-loop
   u    uugc g        -     cu   aau ug      a  -a    u    c           -    uuu 
5'  ucug    a guuggcgg uuggu  gca   g  ccucuc ca  uccc gaga ccuaacuugug acgu   c
    ||||    | |||||||| |||||  |||   |  |||||| ||  |||| |||| ||||||||||| ||||   c
3'  aggc    u cggccgcc gacua  ugu   c  ggggag gu  aggg uucu ggauugggcac ugua   u
   a    ---- g        c     -c   -cu gu      a  cg    -    u           g    uug 
Get sequence
Deep sequencing
21710 reads, 1.35e+03 reads per million, 11 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr15: 21447656-21447800 [+]
intergenic
Clustered miRNAs
< 10kb from dre-mir-125b-1
dre-let-7a-2chr15: 21437876-21437959 [+]
dre-mir-125b-1chr15: 21447656-21447800 [+]
Database links

Mature sequence dre-miR-125b-5p

Accession MIMAT0001821
Previous IDsdre-miR-125b
Sequence

46 - 

ucccugagacccuaacuuguga

 - 67

Get sequence
Deep sequencing62216 reads, 11 experiments
Evidence experimental; cloned [1]
Database links
Predicted targets

Mature sequence dre-miR-125b-1-3p

Accession MIMAT0031963
Sequence

86 - 

acggguuagguucuugggagcu

 - 107

Get sequence
Deep sequencing961 reads, 11 experiments
Evidence not experimental
Database links

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).