Stem-loop sequence dre-mir-125a-1

Accession

MI0001972 (change log)

Description

Danio rerio miR-125a-1 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

14 open access papers mention dre-mir-125a-1
(52 sentences)

Stem-loop

         cu      c      ac     a       ---  u 
5' guaugu  cuuugu ccugag  ccuua ccuguga   gg c
   ||||||  |||||| ||||||  ||||| |||||||   || a
3' cguacg  gggaca ggacuc  ggagu ggacacu   uc a
         uc      a      cu     -       gga  a 

Deep sequencing

17422 reads, 1.09e+03 reads per million, 10 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr16: 24898171-24898253 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir125a-1
• EntrezGene:mir125a-1
• RNAcentral:URS000075EB85_7955
• miRBase Tracker:MI0001972

Mature sequence dre-miR-125a

• Accession: MIMAT0001820
• Sequence: 14 - ucccugagacccuuaaccugug - 35
• Deep sequencing: 34768 reads, 10 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075E604_7955
• Predicted targets:
  • TargetScanFish:dre-miR-125a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).