Stem-loop sequence MI0001963

Accession MI0001963
ID dre-mir-107
Description Danio rerio miR-107 stem-loop
Stem-loop 
-----  u       c   --   u  u          u    ugg a 
     uc gugugcu uga  gcu cu uacaguguug cuug   c u
     || ||||||| |||  ||| || |||||||||| ||||   | g
     ag cacacga acu  cgg ga auguuacgac gaac   g g
cgaca  u       c   au   -  c          -    -ua a
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Genome context
Coordinates (Zv8) Overlapping transcripts
12: 16379115-16379203 [-]
sense
ENSDART00000113654 ; zgc:174153; intron 1
ENSDART00000113654 ; zgc:174153; intron 1
ENSDART00000020824 ; pank1b; intron 4
ENSDART00000020824 ; pank1b; intron 4
antisense
ENSDART00000106035 ; LOC570542; intron 6
ENSDART00000106035 ; LOC570542; intron 6
12: 16379115-16379203 [-]
sense
ENSDART00000113654 ; zgc:174153; intron 1
ENSDART00000113654 ; zgc:174153; intron 1
ENSDART00000020824 ; pank1b; intron 4
ENSDART00000020824 ; pank1b; intron 4
antisense
ENSDART00000106035 ; LOC570542; intron 6
ENSDART00000106035 ; LOC570542; intron 6
Database links
  • ENTREZGENE: 100033626;mir107
Gene family

MIPF0000024; mir-103

Mature sequence MIMAT0001817

Accession MIMAT0001817
ID dre-miR-107
Sequence

51 -  

agcagcauuguacagggcuauca

 - 73

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Evidence by similarity; MI0000114
Predicted targets

References

1
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).