Stem-loop sequence dre-mir-24-1

Accession

MI0001921 (change log)

Description

Danio rerio miR-24-1 stem-loop

Gene family

MIPF0000041; mir-24

Literature search

5 open access papers mention dre-mir-24-1
(78 sentences)

Stem-loop

   -a  uga     g  g   u         ua     u  a 
5'   cc   gcucc gu ccu cugagcuga  ucagu gu g
     ||   ||||| || ||| |||||||||  ||||| || u
3'   gg   ugagg ca gga gacuugacu  gguca ua a
   cc  -ug     a  a   c         -c     c  a 

Deep sequencing

21897 reads, 1.14e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr10: 15960835-15960914 [+]
• Overlapping transcripts:

  antisense

  OTTDART00000043259 ; si:dkey-3h23.2-002; exon 2

  OTTDART00000043258 ; si:dkey-3h23.2-001; exon 3

  ENSDART00000142357 ; si:dkey-3h23.2-002; exon 2

  ENSDART00000144692 ; si:dkey-3h23.2-001; exon 3

Clustered miRNAs

< 10kb from dre-mir-24-1

• dre-mir-23b: chr10: 15954579-15954659 [+]
• dre-mir-27d: chr10: 15954727-15954815 [+]
• dre-mir-24-1: chr10: 15960835-15960914 [+]

Database links

• EntrezGene:mir24-1
• EntrezGene:mir24-1
• RNAcentral:URS000075D330_7955
• miRBase Tracker:MI0001921

Mature sequence dre-miR-24

• Accession: MIMAT0001792
• Sequence: 49 - uggcucaguucagcaggaacag - 70
• Deep sequencing: 85524 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000059273E_7955
• Predicted targets:
  • TargetScanFish:dre-miR-24

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).