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miRBase |
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Stem-loop sequence zma-MIR171c |
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Accession | MI0001835 (change log) | ||||
Description | Zea mays miR171c stem-loop | ||||
Gene family | MIPF0000030; MIR171_1 | ||||
Literature search |
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19 open access papers mention zma-MIR171c | ||||
Stem-loop |
ggggaaucgaaaaccuacgg ug a a cuu c aaa 5' gauauugg cgguuca ucaga ag g gcucc g |||||||| ||||||| ||||| || | ||||| 3' cuauaacc gccgagu aguuu uc c cgggg c -cguucguuucgcuccugca gu c c -ac u acc |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence zma-miR171c-5p |
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Accession | MIMAT0015198 |
Previous IDs | zma-miR171c* |
Sequence |
23 - uauuggugcgguucaaucaga - 43 |
Deep sequencing | 19 reads, 11 experiments |
Evidence | experimental; Illumina [2] |
Mature sequence zma-miR171c-3p |
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Accession | MIMAT0001737 |
Previous IDs | zma-miR171c |
Sequence |
79 - ugacugagccgugccaauauc - 99 |
Deep sequencing | 2006 reads, 149 experiments |
Evidence | experimental; Illumina [2] |
References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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