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miRBase |
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Stem-loop sequence zma-MIR159d |
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Accession | MI0001812 (change log) | ||||
Description | Zea mays miR159d stem-loop | ||||
Gene family | MIPF0000010; MIR159 | ||||
Literature search |
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32 open access papers mention zma-MIR159d | ||||
Stem-loop |
-- - ugcc uc uc a uc g ---- cug ag g u g -cucu caau cg 5' aaga aga ga ga ga gagcucccuucgauccaa ca gagggaaag uggucgg c cu ccgg ucaug auaccu ggugcag ggc a |||| ||| || || || |||||||||||||||||| || ||||||||| ||||||| | || |||| ||||| |||||| ||||||| ||| 3' uucu ucu cu cu cu cucgagggaaguuagguu gu cucccuuuc accagcc g ga ggcc aguac uguggg ucacguc ucg g ua c ---- cu cu c -c g uacu -aa ca g c g uacgu -cac ua |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence zma-miR159d-5p |
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Accession | MIMAT0015179 |
Previous IDs | zma-miR159d* |
Sequence |
23 - gagcucccuucgauccaaucc - 43 |
Deep sequencing | 1183 reads, 175 experiments |
Evidence | experimental; Illumina [2] |
Mature sequence zma-miR159d-3p |
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Accession | MIMAT0001714 |
Previous IDs | zma-miR159d |
Sequence |
178 - cuuggauugaagggagcuccu - 198 |
Deep sequencing | 8606 reads, 195 experiments |
Evidence | experimental; Illumina [2] |
References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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