Stem-loop sequence zma-MIR395b

Accession

MI0001796 (change log)

Description

Zea mays miR395b stem-loop

Gene family

MIPF0000016; MIR395

Literature search

19 open access papers mention zma-MIR395b
(88 sentences)

Stem-loop

   gcaac    ug  u               a               accu     caaua 
5'      guuu  ug uacuaggaguucccu caagcacuucacaau    uggcu     a
        ||||  || ||||||||||||||| |||||||||||||||    |||||      
3'      cgaa  ac augguucucaagggg guuugugaaguguug    accgg     a
   -uuua    gu  u               -               ----     aaauu 

Deep sequencing

204 reads, 1.02e+03 reads per million, 33 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr2: 6287388-6287501 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR395b

• zma-MIR395a: chr2: 6288043-6288191 [-]
• zma-MIR395b: chr2: 6287388-6287501 [-]
• zma-MIR395h: chr2: 6287229-6287313 [-]
• zma-MIR395i: chr2: 6286588-6286657 [-]
• zma-MIR395e: chr2: 6286411-6286495 [-]

Database links

• miRBase Tracker:MI0001796

Mature sequence zma-miR395b-5p

• Accession: MIMAT0015164
• Previous IDs: zma-miR395b*
• Sequence: 23 - guucccuacaagcacuucacaa - 44
• Deep sequencing: 10 reads, 3 experiments
• Evidence: experimental; Illumina [2]

Mature sequence zma-miR395b-3p

• Accession: MIMAT0001698
• Previous IDs: zma-miR395b
• Sequence: 75 - gugaaguguuugggggaacuc - 95
• Deep sequencing: 171 reads, 130 experiments
• Evidence: experimental; Illumina [2]

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).