Stem-loop sequence mtr-MIR160a

Accession

MI0001739 (change log)

Previous IDs

mtr-MIR160

Description

Medicago truncatula miR160 stem-loop

Gene family

MIPF0000032; MIR160

Literature search

5 open access papers mention mtr-MIR160a
(16 sentences)

Stem-loop

   --   -u        uaauu      c       c           ug -     u      g 
5'   aga  auauauac     gcgugc uggcucc uguaugccauu  u agagu caucaa a
     |||  ||||||||     |||||| ||||||| |||||||||||  | ||||| ||||||  
3'   ucu  uauaugug     uguacg accgagg gcgugcgguaa  a uuuca guaguu u
   ua   uu        ----u      u       a           gu a     -      g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): contig_112492: 316-434 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001739

Mature sequence mtr-miR160a

• Accession: MIMAT0001641
• Previous IDs: mtr-miR160
• Sequence: 21 - ugccuggcucccuguaugcca - 41
• Evidence: experimental; 454 [2], Northern [2]

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).