Stem-loop sequence mmu-mir-451a

AccessionMI0001730 (change log)
Previous IDsmmu-mir-451
Symbol MGI:Mir451a
DescriptionMus musculus miR-451 stem-loop
Gene family MIPF0000148; mir-451
Literature search

132 open access papers mention mmu-mir-451a
(703 sentences)

Stem-loop
   cu     au      ga                 a 
5'   uggga  ggcgag  aaccguuaccauuacug g
     |||||  ||||||  |||||||||||||||||  
3'   acccu  ucguuc  uuggcaaugguaaugau u
   ac     cg      uc                 u 
Get sequence
Deep sequencing
3515863 reads, 7e+03 reads per million, 100 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr11: 78073170-78073241 [+]
intergenic
Clustered miRNAs
< 10kb from mmu-mir-451a
mmu-mir-144chr11: 78073005-78073070 [+]
mmu-mir-451bchr11: 78073170-78073241 [-]
mmu-mir-451achr11: 78073170-78073241 [+]
Database links

Mature sequence mmu-miR-451a

Accession MIMAT0001632
Previous IDsmmu-miR-451
Sequence

17 - 

aaaccguuaccauuacugaguu

 - 38

Get sequence
Deep sequencing3515657 reads, 100 experiments
Evidence experimental; cloned [1-3], Illumina [4-5]
Database links
Predicted targets

References

1
PMID:15891114 "Clustering and conservation patterns of human microRNAs" Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H Nucleic Acids Res. 33:2697-2706(2005).
2
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
3
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).