Stem-loop sequence hsa-mir-329-2

Accession

MI0001726

Symbol

HGNC:MIR329-2

Description

Homo sapiens miR-329-2 stem-loop

Gene family

MIPF0000110; mir-329

Stem-loop

g      cu           uu ug   uuc      u  au 
 ugguac  gaagagagguu  c  ggu   uguuuc uu  u
 ||||||  |||||||||||  |  |||   |||||| ||   
 acuaug  cuuuucuccaa  g  cca   acaaag ag  g
a      ac           uu gu   --c      c  ga 

Deep sequencing

293 reads, 6 experiments

Genome context

• Coordinates (GRCh37.p5): chr14: 101493437-101493520 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-329-2

• hsa-mir-379: chr14: 101488403-101488469 [+]
• hsa-mir-411: chr14: 101489662-101489757 [+]
• hsa-mir-299: chr14: 101490131-101490193 [+]
• hsa-mir-380: chr14: 101491354-101491414 [+]
• hsa-mir-1197: chr14: 101491901-101491988 [+]
• hsa-mir-323a: chr14: 101492069-101492154 [+]
• hsa-mir-758: chr14: 101492357-101492444 [+]
• hsa-mir-329-1: chr14: 101493122-101493201 [+]
• hsa-mir-329-2: chr14: 101493437-101493520 [+]
• hsa-mir-494: chr14: 101495971-101496051 [+]
• hsa-mir-1193: chr14: 101496389-101496466 [+]
• hsa-mir-543: chr14: 101498324-101498401 [+]
• hsa-mir-495: chr14: 101500092-101500173 [+]

Database links

• EMBL: AY882323;AY882323
• ENTREZGENE: 574409;MIR329-2
• HGNC: 32051;MIR329-2

Mature sequence hsa-miR-329

• Accession: MIMAT0001629
• Sequence: 52 - aacacaccugguuaaccucuuu - 73
• Deep sequencing: 576 reads, 6 experiments
• Evidence: experimental; cloned [1,3-4], array-cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-329
  • MICRORNA.ORG:hsa-miR-329
  • MIRDB:hsa-miR-329
  • RNA22-HSA:hsa-miR-329
  • TARGETMINER:hsa-miR-329
  • TARGETSCAN-VERT:hsa-miR-329

References

1. PMID:15891114 "Clustering and conservation patterns of human microRNAs" Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H Nucleic Acids Res. 33:2697-2706(2005).
2. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
3. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
4. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).