Stem-loop sequence osa-MIR439i

Accession

MI0001700 (change log)

Description

Oryza sativa miR439i stem-loop

Gene family

MIPF0000092; MIR439

Literature search

2 open access papers mention osa-MIR439i
(2 sentences)

Stem-loop

         -  a    c     g -a u        ggggcguggcuacagugacacuacaaugu 
5' gcaggg ac uauc aacgg c  g guucgaua                             u
   |||||| || |||| ||||| |  | ||||||||                              
3' uguccc ug auag uuguu g  c caagcugu                             u
         a  g    c     g cg -        acacuaauuuauuaaaauuuuuaucuuuu 

Deep sequencing

233 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0001700

Mature sequence osa-miR439i

• Accession: MIMAT0001598
• Previous IDs: osa-MIR439j
• Sequence: 93 - ugucgaaccgcgguuguucga - 113
• Deep sequencing: 11 reads, 2 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:15805478 "Cloning and characterization of microRNAs from rice" Sunkar R, Girke T, Jain PK, Zhu JK Plant Cell. 17:1397-1411(2005).