Stem-loop sequence osa-MIR439a

Accession

MI0001691 (change log)

Description

Oryza sativa miR439a stem-loop

Gene family

MIPF0000092; MIR439

Literature search

2 open access papers mention osa-MIR439a
(2 sentences)

Stem-loop

                uga   a        --u             ug 
5' uacccugucgaac   cgc guucgaca   guaccugucgaac  u
   |||||||||||||   ||| ||||||||   |||||||||||||  g
3' gugggacagcuug   gcg caagcugu   uauggauagcuug  g
                uug   c        ccc             uu 

Deep sequencing

209 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr1: 19880143-19880235 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001691

Mature sequence osa-miR439a

• Accession: MIMAT0001589
• Previous IDs: osa-MIR439a
• Sequence: 66 - ugucgaaccgcgguuguucga - 86
• Deep sequencing: 74 reads, 2 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00005FF10D_39947

References

1. PMID:15805478 "Cloning and characterization of microRNAs from rice" Sunkar R, Girke T, Jain PK, Zhu JK Plant Cell. 17:1397-1411(2005).