Stem-loop sequence rno-mir-449a

Accession MI0001650
Previous IDs rno-mir-449
Description Rattus norvegicus miR-449a stem-loop
Gene family MIPF0000133; mir-449
Stem-loop 
-c             uu      -    u          ugaguau 
  ugugugcgauggg  ggcagu guau guuagcuggu       g
  |||||||||||||  |||||| |||| ||||||||||        
  auacacguuaucc  ucguca cgua caaucgacca       u
ac             uc      a    -          cggaaaa
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Genome context
Coordinates (RGSC3.4) Overlapping transcripts
2: 44418273-44418363 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-449a
rno-mir-449c 2: 44416738-44416836 [+]
rno-mir-449a 2: 44418273-44418363 [+]
Database links

Mature sequence rno-miR-449a-5p

Accession MIMAT0001543
Previous IDs rno-miR-449;rno-miR-449a
Sequence

16 -  

uggcaguguauuguuagcuggu

 - 37

Get sequence
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

Mature sequence rno-miR-449a-3p

Accession MIMAT0017181
Previous IDs rno-miR-449a*
Sequence

56 -  

cagcuaacaugcaacugcucuc

 - 77

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).