Stem-loop sequence sbi-MIR156b

AccessionMI0001506
DescriptionSorghum bicolor miR156b stem-loop
Gene family MIPF0000008; MIR156
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-156_microRNA_precursor. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

MicroRNA (miRNA) precursor mir-156 is a family of plant non-coding RNA. This microRNA has now been predicted or experimentally confirmed in a range of plant species (MIPF0000008). Animal miRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In plants the precursor sequences may be longer, and the carpel factory (caf) enzyme appears to be involved in processing. In this case the mature sequence comes from the 5' arm of the precursor, and both Arabidopsis thaliana and rice genomes contain a number of related miRNA precursors which give rise to almost identical mature sequences. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA.

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Stem-loop
   u      -             a      gguu          a 
5'  gacaga agagagugagcac cacggu    ucuuagcaug g
    |||||| ||||||||||||| ||||||    |||||||||| u
3'  cugucu ucucucacucgug gugucg    aggguuguac g
   a      a             c      ----          c 
Get sequence
Deep sequencing
2617 reads, 1.61e+03 reads per million, 3 experiments
Confidence
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Sorbi1) Overlapping transcripts
chr_3: 3473048-3473131 [-]
intergenic
Clustered miRNAs
< 10kb from sbi-MIR156b
sbi-MIR156cchr_3: 3473369-3473463 [-]
sbi-MIR156bchr_3: 3473048-3473131 [-]
Database links

Mature sequence sbi-miR156b

Accession MIMAT0001400
Sequence

1 - 

ugacagaagagagugagcac

 - 20

Get sequence
Deep sequencing510 reads, 3 experiments
Evidence by similarity; MI0000183

References

1
"Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2
PMID:15660154 "Sorghum genome sequencing by methylation filtration" Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA PLoS Biol. 3:e13(2005).