Stem-loop sequence zma-MIR156d

AccessionMI0001456
DescriptionZea mays miR156d stem-loop
Gene family MIPF0000008; MIR156
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-156_microRNA_precursor. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

MicroRNA (miRNA) precursor mir-156 is a family of plant non-coding RNA. This microRNA has now been predicted or experimentally confirmed in a range of plant species (MIPF0000008). Animal miRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In plants the precursor sequences may be longer, and the carpel factory (caf) enzyme appears to be involved in processing. In this case the mature sequence comes from the 5' arm of the precursor, and both Arabidopsis thaliana and rice genomes contain a number of related miRNA precursors which give rise to almost identical mature sequences. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA.

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Stem-loop
   a    c        ------         -    -        a     -c    aacg      
5'  ggcu ucgagaga      uugacagaa gaga gugagcac cggcg  gacg    acaua 
    |||| ||||||||      ||||||||| |||| |||||||| |||||  ||||    |||| g
3'  ucgg agcucucu      gacugucuu cucu cacucgug gccgc  cugc    uguac 
   -    u        uucucc         u    u        c     uc    cgua      
Get sequence
Deep sequencing
2681 reads, 2.82e+03 reads per million, 3 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (RefGen_v2) Overlapping transcripts
chr5: 92369224-92369342 [-]
intergenic
Database links

Mature sequence zma-miR156d-5p

Accession MIMAT0001351
Previous IDszma-miR156d
Sequence

16 - 

ugacagaagagagugagcac

 - 35

Get sequence
Deep sequencing240 reads, 3 experiments
Evidence experimental; Illumina [2]

Mature sequence zma-miR156d-3p

Accession MIMAT0015124
Previous IDszma-miR156d*
Sequence

80 - 

gcucacuucucuuucugucagc

 - 101

Get sequence
Deep sequencing114 reads, 2 experiments
Evidence experimental; Illumina [2]

References

1
"Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2
PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).