Stem-loop sequence osa-MIR415

AccessionMI0001435 (change log)
DescriptionOryza sativa miR415 stem-loop
Literature search

6 open access papers mention osa-MIR415
(6 sentences)

Stem-loop
   agagaguuuuacagagcagaaacagaacagaagcagagcagcuguguauacacaacacugcaacuaucccuaucacugagggacaaa     aac    ug  c 
5'                                                                                        gcaga   cagc  ag u
                                                                                          |||||   ||||  || c
3'                                                                                        ugucu   gucg  uc u
   ----------------------------------------------------------------gaacuucgaaaacgaaacgaaca     ---    gu  c 
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Deep sequencing
1 reads, 0 reads per million, 1 experiments
Confidence Annotation confidence: not enough data
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Comments

The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr12: 26270477-26270620 [-]
intergenic
Database links

Mature sequence osa-miR415

Accession MIMAT0001331
Sequence

21 - 

aacagaacagaagcagagcag

 - 41

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Evidence by similarity; MI0001426

References

1
PMID:15345049 "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets" Wang XJ, Reyes JL, Chua NH, Gaasterland T Genome Biol. 5:R65(2004).
2
PMID:16669754 "MicroRNAS and their regulatory roles in plants" Jones-Rhoades MW, Bartel DP, Bartel B Annu Rev Plant Biol. 57:19-53(2006).