Stem-loop sequence MI0001416

Accession MI0001416
ID cbr-mir-36
Description Caenorhabditis briggsae miR-36 stem-loop
Stem-loop 
auu   au    -    -                   ug  g     u    acu 
   cca  ugaa accu ucggaccauugugaauuuu  cu cggug uaca   a
   |||  |||| |||| |||||||||||||||||||  || ||||| ||||   a
   ggu  acuu uggg agccugguaacgcuuaaaa  gg gccac augu   c
---   gu    a    u                   gu  -     u    cua
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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 teminal 3' end positions.

Genome context
Coordinates (WS200) Overlapping transcripts
II: 7535762-7535868 [+]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-36
cbr-mir-36 II: 7535762-7535868 [+]
cbr-mir-38 II: 7535859-7535973 [+]
cbr-mir-39 II: 7536036-7536148 [+]
cbr-mir-40 II: 7536135-7536250 [+]
cbr-mir-41b II: 7536263-7536362 [+]
cbr-mir-35d II: 7536385-7536474 [+]
cbr-mir-41 II: 7536494-7536603 [+]
cbr-mir-35 II: 7536620-7536731 [+]
Gene family

MIPF0000096; mir-36

Mature sequence MIMAT0001314

Accession MIMAT0001314
ID cbr-miR-36
Sequence

64 -  

ucaccgggugaaaauucgcaau

 - 85

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Evidence by similarity; MI0000007
Predicted targets

References

1
"The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).