Stem-loop sequence cbr-mir-239b

Accession MI0001410
Description Caenorhabditis briggsae miR-239b stem-loop
Gene family MIPF0000135; mir-239
Stem-loop 
---------------------ua    -  -aca   a            c       ua    cu 
                       ggac ag    ugc auuuuuguacug acaaaag  cuga  a
                       |||| ||    ||| |||||||||||| |||||||  ||||  u
                       ccug uc    acg uaagaacgugac uguuuuc  gacu  u
uuaacaaauuagggauuuuuuua    g  gaga   g            c       gc    cu
Get sequence
Deep sequencing
2 reads, 1 experiments
Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 1 position.

Genome context
Coordinates (WS200) Overlapping transcripts
chrX: 15174122-15174233 [-]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-239b
cbr-mir-239a chrX: 15175306-15175418 [+]
cbr-mir-239b chrX: 15174122-15174233 [-]

Mature sequence cbr-miR-239b

Accession MIMAT0001308
Sequence

20 -  

uuguacugcacaaaaguacug

 - 40

Get sequence
Deep sequencing 2 reads, 1 experiments
Evidence by similarity; MI0000315

References

1
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).