Stem-loop sequence cbr-mir-358

Accession MI0001403
Description Caenorhabditis briggsae miR-358 stem-loop
Gene family MIPF0000226; mir-358
Stem-loop 
-------a   -  -cauu        u   -     ucc         a  u auaucca 
        cuc cc     cggauuga acc cgacu   ggauaccaa ug c       a
        ||| ||     |||||||| ||| |||||   ||||||||| || |        
        gag gg     gucuaacu ugg gcuga   ccuaugguu ac g       c
uguuguga   c  cacau        c   u     -uu         a  u cuuugcu
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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context
Coordinates (WS200) Overlapping transcripts
chrV: 1214358-1214470 [-]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-358
cbr-mir-358 chrV: 1214358-1214470 [-]
cbr-mir-357-2 chrV: 1213904-1214016 [-]

Mature sequence cbr-miR-358

Accession MIMAT0001301
Sequence

63 -  

caauugguauccuuagucgugg

 - 84

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Evidence by similarity; MI0000757

References

1
PMID:15317971 "Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification" Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB RNA. 10:1309-1322(2004).