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miRBase |
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Stem-loop sequence dre-mir-199-1 |
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Accession | MI0001373 (change log) | |||||
Previous IDs | dre-mir-199a-1 | |||||
Description | Danio rerio miR-199-1 stem-loop | |||||
Gene family | MIPF0000040; mir-199 | |||||
Literature search |
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10 open access papers mention dre-mir-199-1 | |||||
Stem-loop |
u - u c auc u c --- ga 5' cc ugc c guc ccagugu cagacuac ugu ucag u || ||| | ||| ||||||| |||||||| ||| |||| c 3' gg acg g cag gguuaca gucugaug aca gguc a - u u u auu c - ugu au |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence dre-miR-199-5p |
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Accession | MIMAT0001277 |
Previous IDs | dre-miR-199a;dre-miR-199 |
Sequence |
15 - cccaguguucagacuaccuguuc - 37 |
Deep sequencing | 131161 reads, 11 experiments |
Evidence | experimental; cloned [1-2] |
Database links |
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Predicted targets |
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Mature sequence dre-miR-199-3p |
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Accession | MIMAT0003155 |
Previous IDs | dre-miR-199* |
Sequence |
53 - uacaguagucugcacauugguu - 74 |
Deep sequencing | 133080 reads, 11 experiments |
Evidence | experimental; array [3], in-situ [3] |
Database links |
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References |
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1 |
PMID:12624257
"Vertebrate microRNA genes"
Science. 299:1540(2003).
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2 |
PMID:15937218
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
Genes Dev. 19:1288-1293(2005).
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3 |
PMID:15919954
"MicroRNA expression in zebrafish embryonic development"
Science. 309:310-311(2005).
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