Stem-loop sequence dre-mir-192

Accession

MI0001371 (change log)

Description

Danio rerio miR-192 stem-loop

Gene family

MIPF0000063; mir-192

Literature search

3 open access papers mention dre-mir-192
(7 sentences)

Stem-loop

   cuaggac       ga  a     -          c    guuug 
5'        acagggu  ug ccuau gaauugacag cagu     c
          |||||||  || ||||| |||||||||| ||||      
3'        ugucccg  ac ggaug cuugacuguc gucg     a
   ------u       uc  c     u          c    accug 

Deep sequencing

3384 reads, 145 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr10: 27063354-27063438 [+]	intergenic
KZ114914.1: 88767-88851 [+]	intergenic
KZ115324.1: 286483-286567 [+]	intergenic

Clustered miRNAs

< 10kb from dre-mir-192

• dre-mir-194a: chr10: 27063174-27063257 [+]
• dre-mir-192: chr10: 27063354-27063438 [+]

Database links

• EntrezGene:mir192
• EntrezGene:mir192
• RNAcentral:URS000075A5C8_7955
• miRBase Tracker:MI0001371

Mature sequence dre-miR-192

• Accession: MIMAT0001275
• Sequence: 16 - augaccuaugaauugacagcc - 36
• Deep sequencing: 3325 reads, 11 experiments
• Evidence: experimental; PCR [1], cloned [2]
• Database links:
  • RNAcentral:URS000075DE87_7955
• Predicted targets:
  • TargetScanFish:dre-miR-192

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).