Stem-loop sequence dre-mir-182

Accession

MI0001368 (change log)

Description

Danio rerio miR-182 stem-loop

Gene family

MIPF0000116; mir-182

Literature search

10 open access papers mention dre-mir-182
(116 sentences)

Stem-loop

   guau       u -g      uca      ---   g 
5'     uuggcaa g  uagaac   cacugg   uga g
       ||||||| |  ||||||   ||||||   ||| u
3'     aaccguu c  aucuug   guggcc   acu a
   -auc       - ag      ---      uag   g 

Deep sequencing

50468 reads, 2.67e+03 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr4: 15075665-15075732 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-182

• dre-mir-183: chr4: 15074566-15074663 [+]
• dre-mir-96: chr4: 15074715-15074839 [+]
• dre-mir-182: chr4: 15075665-15075732 [+]

Database links

• EntrezGene:mir182
• EntrezGene:mir182
• RNAcentral:URS0000759A36_7955
• miRBase Tracker:MI0001368

Mature sequence dre-miR-182-5p

• Accession: MIMAT0001271
• Previous IDs: dre-miR-182
• Sequence: 4 - uuuggcaaugguagaacucaca - 25
• Deep sequencing: 50384 reads, 11 experiments
• Evidence: experimental; PCR [1], cloned [2]
• Database links:
  • RNAcentral:URS000016B3AD_7955
• Predicted targets:
  • TargetScanFish:dre-miR-182

Mature sequence dre-miR-182-3p

• Accession: MIMAT0001272
• Previous IDs: dre-miR-182*
• Sequence: 48 - ugguucuagacuugccaacua - 68
• Deep sequencing: 12 reads, 6 experiments
• Evidence: experimental; PCR [1]

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).