Stem-loop sequence dre-mir-7a-2

Accession

MI0001362 (change log)

Previous IDs

dre-mir-7-2

Description

Danio rerio miR-7a-2 stem-loop

Gene family

MIPF0000022; mir-7

Literature search

13 open access papers mention dre-mir-7a-2
(102 sentences)

Stem-loop

   ----------      g    au  a     a       u      gug  gu 
5'           uuuugg cauu  gg agacu gugauuu guuguu   ac  c
             |||||| ||||  || ||||| ||||||| ||||||   ||  a
3'           aagacc guga  cc ucuga cacugaa caacag   ug  u
   cugcucaccu      a    cu  g     -       -      uca  ac 

Deep sequencing

3602 reads, 118 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr7: 14450524-14450620 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir7a-2
• EntrezGene:mir7a-2
• RNAcentral:URS000075B7B5_7955
• miRBase Tracker:MI0001362

Mature sequence dre-miR-7a

• Accession: MIMAT0001266
• Previous IDs: dre-miR-7
• Sequence: 13 - uggaagacuagugauuuuguugu - 35
• Deep sequencing: 10824 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000591950_7955
• Predicted targets:
  • TargetScanFish:dre-miR-7a

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).