Stem-loop sequence gga-mir-34c

AccessionMI0001261 (change log)
DescriptionGallus gallus miR-34c stem-loop
Gene family MIPF0000039; mir-34
Literature search

10 open access papers mention gga-mir-34c
(28 sentences)

Stem-loop
   agc  gg     a   a    a     c      --  a 
5'    cu  uuacc ggc gugu guuag ugauug  cc c
      ||  ||||| ||| |||| ||||| ||||||  ||  
3'    ga  aaugg ccg caca caauc acuaac  gg c
   ---  aa     a   a    c     -      ca  a 
Get sequence
Deep sequencing
61271 reads, 920 reads per million, 5 experiments
Confidence Annotation confidence: high
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Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr24: 5539871-5539944 [+]
intergenic
Clustered miRNAs
< 10kb from gga-mir-34c
gga-mir-34bchr24: 5539134-5539217 [+]
gga-mir-34cchr24: 5539871-5539944 [+]
Database links

Mature sequence gga-miR-34c-5p

Accession MIMAT0001180
Sequence

13 - 

aggcaguguaguuagcugauugc

 - 35

Get sequence
Deep sequencing60276 reads, 5 experiments
Evidence experimental; Illumina [2]
Predicted targets

Mature sequence gga-miR-34c-3p

Accession MIMAT0026541
Sequence

46 - 

aaucacuaaccacacagccagg

 - 67

Get sequence
Deep sequencing995 reads, 5 experiments
Evidence experimental; Illumina [2]
Predicted targets

References

1
PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).