Stem-loop sequence gga-mir-181b-1

AccessionMI0001219 (change log)
DescriptionGallus gallus miR-181b-1 stem-loop
Gene family MIPF0000007; mir-181
Literature search

13 open access papers mention gga-mir-181b-1
(35 sentences)

Stem-loop
   --aaaa       aucaa         cug           aa  a 
5'       ggucaca     cauucauug   ucgguggguuu  cu u
         |||||||     |||||||||   |||||||||||  ||  
3'       ccggugu     guaaguaac   agucacucgaa  gg g
   uacacc       -caac         --a           ca  u 
Get sequence
Deep sequencing
250091 reads, 2.3e+03 reads per million, 5 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr8: 2005358-2005446 [+]
intergenic
Clustered miRNAs
< 10kb from gga-mir-181b-1
gga-mir-181a-1chr8: 2005169-2005272 [+]
gga-mir-181b-1chr8: 2005358-2005446 [+]
Database links

Mature sequence gga-miR-181b-5p

Accession MIMAT0001151
Sequence

15 - 

aacauucauugcugucgguggg

 - 36

Get sequence
Deep sequencing495048 reads, 5 experiments
Evidence experimental; cloned [2], Illumina [3]
Database links
Predicted targets

Mature sequence gga-miR-181b-1-3p

Accession MIMAT0026522
Sequence

56 - 

ucacugaacaaugaaugcaac

 - 76

Get sequence
Deep sequencing2551 reads, 5 experiments
Evidence experimental; Illumina [3]
Database links
Predicted targets

References

1
PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2
PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3
" McBride D, Carre W, Law A, Clinton M Unpublished.
4
PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
5
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).