Stem-loop sequence gga-mir-18a

AccessionMI0001183 (change log)
DescriptionGallus gallus miR-18a stem-loop
Gene family MIPF0000001; mir-17
Literature search

11 open access papers mention gga-mir-18a
(20 sentences)

Stem-loop
   ----gu         a   --   u   uc   u    a   -  aa u 
5'       gcuuuuugu cua  agg gca  uag gcag uag ug  g a
         ||||||||| |||  ||| |||  ||| |||| ||| ||  | g
3'       ugaagaaua ggu  ucc cgu  auc cguc auc ac  u a
   cuguau         c   cu   u   ga   c    -   u  ga u 
Get sequence
Deep sequencing
11246 reads, 120 reads per million, 5 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr1: 148023819-148023911 [-]
intergenic
Clustered miRNAs
< 10kb from gga-mir-18a
gga-mir-17chr1: 148023974-148024058 [-]
gga-mir-18achr1: 148023819-148023911 [-]
gga-mir-19achr1: 148023685-148023765 [-]
gga-mir-20achr1: 148023499-148023596 [-]
gga-mir-19bchr1: 148023376-148023462 [-]
gga-mir-92-1chr1: 148023263-148023340 [-]
Database links

Mature sequence gga-miR-18a-5p

Accession MIMAT0001113
Sequence

14 - 

uaaggugcaucuagugcagaua

 - 35

Get sequence
Deep sequencing10766 reads, 5 experiments
Evidence experimental; cloned [2], Illumina [3]
Predicted targets

Mature sequence gga-miR-18a-3p

Accession MIMAT0026499
Sequence

55 - 

acugcccuaagugcuccuucug

 - 76

Get sequence
Deep sequencing480 reads, 5 experiments
Evidence experimental; Illumina [3]
Database links
Predicted targets

References

1
PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2
PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3
" McBride D, Carre W, Law A, Clinton M Unpublished.
4
PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
5
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).