Stem-loop sequence osa-MIR171e

Accession MI0001136
Description Oryza sativa miR171e stem-loop
Gene family MIPF0000030; MIR171_1
Stem-loop 
-u    g   u         u       c     c     uggc    u  ---a       c 
  ggua cua gauguuggc cggcuca ucaga ggcau    guga gc    aagcaug a
  |||| ||| ||||||||| ||||||| ||||| |||||    |||| ||    |||||||  
  ucgu gau cuauaaccg gccgagu agucu uugug    cacu cg    uucgugc u
uc    -   u         u       u     -     --uu    -  aucg       g
Get sequence
Deep sequencing
2617 reads, 4 experiments
Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr3: 1970487-1970605 [+]
intergenic

Mature sequence osa-miR171e-5p

Accession MIMAT0022879
Sequence

13 -  

uguuggcucggcucacucaga

 - 33

Get sequence
Deep sequencing 280 reads, 2 experiments
Evidence experimental; Solexa [2]

Mature sequence osa-miR171e-3p

Accession MIMAT0001066
Previous IDs osa-miR171e
Sequence

89 -  

ugauugagccgugccaauauc

 - 109

Get sequence
Deep sequencing 2337 reads, 4 experiments
Evidence by similarity; MI0000214

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).