Stem-loop sequence osa-MIR171d

Accession MI0001135
Description Oryza sativa miR171d stem-loop
Gene family MIPF0000030; MIR171_1
Stem-loop 
uugua   au         c       c     ----------    u   c g    -ga   g     ga 
     gcu  gauguuggc cggcuca ucaga          ugga cau g ugca   aga ugcau  a
     |||  ||||||||| ||||||| |||||          |||| ||| | ||||   ||| |||||  u
     cga  cuauaaccg gccgagu agucu          accu gua u augu   ucu acgua  c
uacca   cu         u       u     ucaaggucgu    c   - g    gac   g     gu
Get sequence
Deep sequencing
2604 reads, 4 experiments
Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr10: 21237313-21237447 [+]
intergenic

Mature sequence osa-miR171d-5p

Accession MIMAT0022878
Sequence

13 -  

uguuggcccggcucacucaga

 - 33

Get sequence
Deep sequencing 218 reads, 3 experiments
Evidence experimental; Solexa [2]

Mature sequence osa-miR171d-3p

Accession MIMAT0001065
Previous IDs osa-miR171d
Sequence

105 -  

ugauugagccgugccaauauc

 - 125

Get sequence
Deep sequencing 2386 reads, 4 experiments
Evidence by similarity; MI0000214

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).