Stem-loop sequence osa-MIR171c

Accession MI0001134
Description Oryza sativa miR171c stem-loop
Gene family MIPF0000030; MIR171_1
Stem-loop 
gu  ga   g        ug             a  cuu u     gaa 
  gg  acg gauauugg  cgguucaaucaga ag   g gcucc   g
  ||  ||| ||||||||  ||||||||||||| ||   | |||||    
  cc  ugc cuauaacc  gccgaguuaguuu uc   c cgggg   g
uu  gc   a        gu             c  -ac u     agc
Get sequence
Deep sequencing
2894 reads, 4 experiments
Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr4: 31713472-31713570 [-]
intergenic

Mature sequence osa-miR171c-5p

Accession MIMAT0022877
Sequence

10 -  

ggauauuggugcgguucaauc

 - 30

Get sequence
Deep sequencing 391 reads, 4 experiments
Evidence experimental; Solexa [2]

Mature sequence osa-miR171c-3p

Accession MIMAT0001064
Previous IDs osa-miR171c
Sequence

69 -  

ugauugagccgugccaauauc

 - 89

Get sequence
Deep sequencing 2503 reads, 4 experiments
Evidence by similarity; MI0000214

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).