Stem-loop sequence osa-MIR171b

Accession MI0001133
Description Oryza sativa miR171b stem-loop
Gene family MIPF0000030; MIR171_1
Stem-loop 
---      acgg        g               -  cuu u     gga 
   gcgacg    gauauugg gcgguucaaucagaa ag   g gcucc   a
   ||||||    |||||||| ||||||||||||||| ||   | |||||    
   cgcugc    cuauaacc ugccgaguuaguuuu uc   c cgagg   g
cua      ---a        g               c  -au u     agc
Get sequence
Deep sequencing
2947 reads, 4 experiments
Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr8: 5369153-5369252 [+]
intergenic

Mature sequence osa-miR171b

Accession MIMAT0001063
Sequence

70 -  

ugauugagccgugccaauauc

 - 90

Get sequence
Deep sequencing 2503 reads, 4 experiments
Evidence by similarity; MI0000214

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).