Stem-loop sequence osa-MIR169o

Accession MI0001130
Description Oryza sativa miR169o stem-loop
Gene family MIPF0000012; MIR169_1
Stem-loop 
cu  -       -         u    u     c  uuuu   c  uguug  u     -   cgucuaucuaucugccauggcagauggc 
  cc cuuuggu agccaagaa gacu gccua gc    gcc uc     gc caucc auc                            a
  || ||||||| ||||||||| |||| ||||| ||    ||| ||     || ||||| |||                             
  gg gagaccg ucgguucuu cugg cgggu cg    cgg ag     cg guagg uag                            g
-c  u       a         -    c     a  ---u   -  --uaa  u     a   uguucuuaaagaaagucuuugggaauua
Get sequence
Deep sequencing
6560 reads, 4 experiments
Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr11: 6081528-6081700 [-]
intergenic
Clustered miRNAs
< 10kb from osa-MIR169o
osa-MIR169n Chr11: 6085252-6085428 [-]
osa-MIR169o Chr11: 6081528-6081700 [-]

Mature sequence osa-miR169o

Accession MIMAT0001060
Sequence

11 -  

uagccaagaaugacuugccua

 - 31

Get sequence
Deep sequencing 6502 reads, 4 experiments
Evidence by similarity; MI0000212

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).