Stem-loop sequence osa-MIR319a

Accession MI0001098
Description Oryza sativa miR319a stem-loop
Gene family MIPF0000010; MIR159
Stem-loop 
---  u     aa a    u            cu u        u        --uua      g   aa       u  ac         aagu    g 
   ug guaag  g gagc cucuucagucca  c cagauggc guaggguu     uuagcu ccg  ucaucca uc  cuaccaaga    ugca g
   || |||||  | |||| ||||||||||||  | |||||||| ||||||||     |||||| |||  ||||||| ||  |||||||||    ||||  
   ac cguuc  c cucg gggaagucaggu  g guuugccg cgucucga     aaucga ggc  aguaggu ag  gaugguucu    augu a
cga  u     -- -    u            ug u        -        uuuaa      g   gc       c  gc         --cu    g
Get sequence
Deep sequencing
1748 reads, 4 experiments
Genome context
Coordinates (MSU7) Overlapping transcripts
Chr1: 26823282-26823472 [-]
intergenic

Mature sequence osa-miR319a-5p

Accession MIMAT0020914
Sequence

56 -  

agcugccgaaucauccauuca

 - 76

Get sequence
Evidence experimental; Solexa [2]

Mature sequence osa-miR319a-3p

Accession MIMAT0020915
Sequence

117 -  

acuggaugacgcgggagcuaa

 - 137

Get sequence
Deep sequencing 978 reads, 4 experiments
Evidence experimental; Solexa [2]

Mature sequence osa-miR319a-3p.2-3p

Accession MIMAT0001028
Previous IDs osa-miR319a;osa-miR319a-3p.2
Sequence

162 -  

uuggacugaagggugcuccc

 - 181

Get sequence
Deep sequencing 667 reads, 4 experiments
Evidence by similarity; MI0000545
Validated targets

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus" Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D RNA Biol. 8:538-547(2011).