Stem-loop sequence osa-MIR159b

Accession MI0001093
Description Oryza sativa miR159b stem-loop
Gene family MIPF0000010; MIR159
Stem-loop 
     u  a ug            u     u  aa    uaucug    -  -   a a   g    u     guuc    uau        aua 
gguua ga g  gagcuccuuucg uccaa ga  gguu      aagg gu gau c gcu cuug ucaug    ccac   ucuaucuc   g
||||| || |  |||||||||||| ||||| ||  ||||      |||| || ||| | ||| |||| |||||    ||||   ||||||||   g
cuagu cu c  cucgagggaagu agguu cu  ccag      uucc ca cua g cga gaac aguac    ggug   ggauagag   a
     u  a gu            u     u  ca    ---ucg    u  a   a c   g    c     guuu    uuc        aaa
Get sequence
Deep sequencing
6785 reads, 4 experiments
Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr1: 1215030-1215217 [+]
intergenic

Mature sequence osa-miR159b

Accession MIMAT0001023
Sequence

158 -  

uuuggauugaagggagcucug

 - 178

Get sequence
Deep sequencing 5874 reads, 4 experiments
Evidence by similarity; MI0000189

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).