Stem-loop sequence osa-MIR156k

AccessionMI0001090 (change log)
DescriptionOryza sativa miR156k stem-loop
Gene family MIPF0000008; MIR156
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-156_microRNA_precursor. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

MicroRNA (miRNA) precursor mir-156 is a family of plant non-coding RNA. This microRNA has now been predicted or experimentally confirmed in a range of plant species (MIPF0000008). Animal miRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In plants the precursor sequences may be longer, and the carpel factory (caf) enzyme appears to be involved in processing. In this case the mature sequence comes from the 5' arm of the precursor, and both Arabidopsis thaliana and rice genomes contain a number of related miRNA precursors which give rise to almost identical mature sequences. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA.

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   uu  ga ug        -   -g          --a   -     c      ga 
5'   ga  g  augacaga aga  agagagcaca   ccc ggcag agcgac  c
     ||  |  |||||||| |||  ||||||||||   ||| ||||| ||||||  g
3'   cu  c  uacugucu ucu  ucucucgugu   ggg ccguc ucgcug  g
   ac  gc gu        a   ag          gcc   a     u      gc 
Get sequence
Deep sequencing
378295 reads, 2.61e+05 reads per million, 2 experiments
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This sequence is a predicted paralogue of the previously identified miR156 family [1]. It is predicted to target mRNAs coding for Squamosa-promoter Binding Protein (SBP)-like transcription factors.

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr9: 18289107-18289212 [-]
Database links

Mature sequence osa-miR156k

Accession MIMAT0001020

11 - 


 - 31

Get sequence
Deep sequencing378295 reads, 2 experiments
Evidence by similarity; MI0000178
Database links