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miRBase |
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Stem-loop sequence ath-MIR167c |
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Accession | MI0001088 (change log) | ||||
Description | Arabidopsis thaliana miR167c stem-loop | ||||
Gene family | MIPF0000125; MIR167_2 | ||||
Literature search |
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45 open access papers mention ath-MIR167c | ||||
Stem-loop |
c g -uu u uc --- ---- uaguuaauaaauauuuuau 5' ca uagcag aagcugccagcaugaucu gucu cucucuu agguu ucauaua a || |||||| |||||||||||||||||| |||| ||||||| ||||| ||||||| u 3' gu aucguc uuugauggucguacugga caga gagagag uucga aguauau a - a cac u ga aga uacu uagaacauucuuguucuuu |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence is a predicted paralogue of the previously identified miR167 family [1], subsequently verified in [2]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors). |
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Genome context |
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Database links |
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Mature sequence ath-miR167c-5p |
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Accession | MIMAT0001018 |
Previous IDs | ath-miR167c |
Sequence |
12 - uaagcugccagcaugaucuug - 32 |
Evidence | experimental; 454 [2], Illumina [3] |
Mature sequence ath-miR167c-3p |
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Accession | MIMAT0031917 |
Sequence |
130 - uaggucaugcugguaguuucacc - 152 |
Evidence | not experimental |
References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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2 |
PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
Genes Dev. 20:3407-3425(2006).
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3 |
PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
J Exp Bot. 61:165-177(2010).
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