Stem-loop sequence ath-MIR402

Accession MI0001071
Description Arabidopsis thaliana miR402 stem-loop
Gene family MIPF0001123; MIR402
Stem-loop 
cguggua     -    -g   u            u   ccuuu     uuaacccauauuuuc           c    u           acaucu   -       --a    gucauuuuucugaaaucuucuugccucaauuuccaacagcagauucaucuu 
       gauaa guuu  agu gcauaguggcag cuu     guuug               augauucgagg cuau aaaccucuguu      gcu uuuugaa   aguu                                                   u
       ||||| ||||  ||| |||||||||||| |||     |||||               ||||||||||| |||| |||||||||||      ||| |||||||   ||||                                                   c
       cuauu caaa  uca cguaucaucguc gag     caaac               uacuaagcucc gaua uuuggggauaa      cga aaagcuu   ucag                                                   a
----aaa     u    ag   u            u   -----     -------------ua           a    -           aauuuc   u       cag    aauuaaagaaggguggaguaaaaaagauaguuuuugauugccuaguagguu
Get sequence
Deep sequencing
27 reads, 6 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr1: 29016520-29016828 [+]
intergenic

Mature sequence ath-miR402

Accession MIMAT0001003
Sequence

67 -  

uucgaggccuauuaaaccucug

 - 88

Get sequence
Deep sequencing 22 reads, 6 experiments
Evidence experimental; cloned [1], Northern [1], MPSS [2], 454 [3]
Validated targets

References

1
PMID:15258262 "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" Sunkar R, Zhu JK Plant Cell. 16:2001-2019(2004).
2
PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
3
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).