Stem-loop sequence osa-MIR396a

Accession MI0001046
Description Oryza sativa miR396a stem-loop
Gene family MIPF0000047; MIR396
Stem-loop 
     ug  c            c         acgcaugaugaauaaucccuuugguuaauugugaucuggucucu 
cuuug  au uuccacagcuuu uugaacugc                                            g
|||||  || |||||||||||| |||||||||                                             
gagac  ua agggugucgaaa aacuugacg                                            a
     gu  a            u         agagagacuacgguuacguuggcuagcucagauugaugcuagag
Get sequence
Deep sequencing
1168 reads, 4 experiments
Comments

This sequence belongs to the miR396 family of miRNAs, which are predicted to target mRNAs coding for Growth Regulating Factor (GRF) transcription factors, rhodenase-like proteins, and kinesin-like protein B [1].

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr2: 34280384-34280537 [+]
intergenic
Clustered miRNAs
< 10kb from osa-MIR396a
osa-MIR396a Chr2: 34280384-34280537 [+]
osa-MIR396c Chr2: 34287873-34288013 [-]

Mature sequence osa-miR396a-5p

Accession MIMAT0000977
Previous IDs osa-miR396a
Sequence

11 -  

uuccacagcuuucuugaacug

 - 31

Get sequence
Deep sequencing 1006 reads, 4 experiments
Evidence by similarity; MI0001013

Mature sequence osa-miR396a-3p

Accession MIMAT0022863
Sequence

126 -  

guucaauaaagcugugggaa

 - 145

Get sequence
Deep sequencing 162 reads, 3 experiments
Evidence experimental; Solexa [2]

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).