Stem-loop sequence osa-MIR395d

AccessionMI0001029 (change log)
DescriptionOryza sativa miR395d stem-loop
Gene family MIPF0000016; MIR395
Literature search

40 open access papers mention osa-MIR395d
(170 sentences)

Stem-loop
     au     u         u              ----    cua 
5' gu  ugucg gaguucccu caagcacuucacgu    ggca   u
   ||  ||||| ||||||||| ||||||||||||||    ||||   c
3' ca  auagc cucaagggg guuugugaagugua    ccgu   u
     cu     u         -              ucau    aac 
Get sequence
Deep sequencing
48 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr4: 31805055-31805142 [-]
intergenic
Clustered miRNAs
< 10kb from osa-MIR395d
osa-MIR395aChr4: 31805494-31805635 [-]
osa-MIR395bChr4: 31805334-31805419 [-]
osa-MIR395cChr4: 31805193-31805281 [-]
osa-MIR395dChr4: 31805055-31805142 [-]
osa-MIR395eChr4: 31804912-31804999 [-]
osa-MIR395fChr4: 31804774-31804855 [-]
osa-MIR395gChr4: 31804633-31804718 [-]
Database links

Mature sequence osa-miR395d

Accession MIMAT0000960
Sequence

58 - 

gugaaguguuugggggaacuc

 - 78

Get sequence
Deep sequencing39 reads, 2 experiments
Evidence by similarity; MI0001007
Database links

References

1
2
PMID:16117853 "Molecular evolution of the rice miR395 gene family" Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L Cell Res. 15:631-638(2005).