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miRBase |
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Stem-loop sequence ath-MIR395b |
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Accession | MI0001008 (change log) | |||||||
Description | Arabidopsis thaliana miR395b stem-loop | |||||||
Gene family | MIPF0000016; MIR395 | |||||||
Literature search |
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26 open access papers mention ath-MIR395b | |||||||
Stem-loop |
u c u uu u aa uca a 5' aug c cca gaguucccu aacgcuuca uguu auac aagcc c ||| | ||| ||||||||| ||||||||| |||| |||| ||||| a 3' uac g ggu cucaggggg uugugaagu acaa uaug uuugg u u u u gu c ca --- u |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence ath-miR395b |
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Accession | MIMAT0000939 |
Sequence |
70 - cugaaguguuuggggggacuc - 90 |
Evidence | experimental; 5'RACE [1], Northern [1], PCR [1], MPSS [2], 454 [3], Illumina [4] |
References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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2 |
PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
Genome Res. 16:1276-1288(2006).
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3 |
PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
Genes Dev. 20:3407-3425(2006).
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4 |
PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
J Exp Bot. 61:165-177(2010).
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