Stem-loop sequence ath-MIR395b

AccessionMI0001008 (change log)
DescriptionArabidopsis thaliana miR395b stem-loop
Gene family MIPF0000016; MIR395
Literature search

26 open access papers mention ath-MIR395b
(108 sentences)

Stem-loop 
      u c   u         uu         u    aa    uca     a 
5' aug c cca gaguucccu  aacgcuuca uguu  auac   aagcc c
   ||| | ||| |||||||||  ||||||||| ||||  ||||   ||||| a
3' uac g ggu cucaggggg  uugugaagu acaa  uaug   uuugg u
      u u   u         gu         c    ca    ---     u
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Confidence Annotation confidence: not enough data
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Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1].

Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr1: 9364471-9364570 [+]
intergenic
Clustered miRNAs
< 10kb from ath-MIR395b
ath-MIR395achr1: 9363196-9363288 [-]
ath-MIR395bchr1: 9364471-9364570 [+]
ath-MIR395cchr1: 9367080-9367179 [+]
Database links

Mature sequence ath-miR395b

Accession MIMAT0000939
Sequence

70 -  

cugaaguguuuggggggacuc

 - 90

Get sequence
Evidence experimental; 5'RACE [1], Northern [1], PCR [1], MPSS [2], 454 [3], Illumina [4]

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
3
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
4
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).