Stem-loop sequence ath-MIR391

Accession MI0001002
Description Arabidopsis thaliana miR391 stem-loop
Gene family MIPF0001151; MIR391
Stem-loop 
    --       cacau    g   ----     cu   u  a g  u    aac    a   -   au     u  c          g  c      -----cu      
uaga  gugauua     acaa ugg    ucuug  ucu cu u gu uuaa   ugca aua aag  uugcu cg aggagagaua cg caucac       cuucu 
||||  |||||||     |||| |||    |||||  ||| || | || ||||   |||| ||| |||  ||||| || |||||||||| || ||||||       |||| a
aucu  cacuaau     uguu acu    ggaac  aga ga g ca aauu   acgu uau uuc  aacga gc uccucucuau gc guggug       gaaga 
    cc       -aacu    g   uuau     -u   -  - g  u    -cu    a   a   cu     u  a          g  a      aucaauu
Get sequence
Deep sequencing
1489 reads, 7 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr5: 24293093-24293298 [+]
intergenic

Mature sequence ath-miR391

Accession MIMAT0000933
Sequence

68 -  

uucgcaggagagauagcgcca

 - 88

Get sequence
Deep sequencing 1050 reads, 7 experiments
Evidence experimental; cloned [1], 454 [2], Northern [2], Solexa [3]

References

1
PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
2
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
3
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).