Stem-loop sequence ath-MIR390a

AccessionMI0001000 (change log)
DescriptionArabidopsis thaliana miR390a stem-loop
Gene family MIPF0000101; MIR390
Literature search

34 open access papers mention ath-MIR390a
(122 sentences)

Stem-loop
       --      au u  a          g           --u   -   c  a 
5' guag  agaaga  c gu aagcucagga ggauagcgcca   gau gau ac u
   ||||  ||||||  | || |||||||||| |||||||||||   ||| ||| ||  
3' cauc  ucuucu  g ua uuugaguccu ccuaucgcggu   uua cua ug u
       au      cg u  c          a           uuu   u   u  c 
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Confidence Annotation confidence: not enough data
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Comments

miR390 was independently cloned by the ASRP project [1], and predicted by computational methods [2].

Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr2: 16061954-16062060 [+]
intergenic
Database links

Mature sequence ath-miR390a-5p

Accession MIMAT0000931
Previous IDsath-miR390a
Sequence

18 - 

aagcucaggagggauagcgcc

 - 38

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Evidence experimental; cloned [1,3], 454 [4-5], MPSS [4], Illumina [6]

Mature sequence ath-miR390a-3p

Accession MIMAT0031902
Sequence

70 - 

cgcuauccauccugaguuuca

 - 90

Get sequence
Evidence not experimental

References

1
PMID:15608278 "ASRP: the Arabidopsis Small RNA Project Database" Gustafson AM, Allen E, Givan S, Smith D, Carrington JC, Kasschau KD Nucleic Acids Res. 33:D637-D640(2005).
2
PMID:15632092 "Computational prediction of miRNAs in Arabidopsis thaliana" Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V, Sundaresan V Genome Res. 15:78-91(2005).
3
PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
4
PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
5
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
6
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).