Stem-loop sequence rno-mir-30c-2

AccessionMI0000871 (change log)
DescriptionRattus norvegicus miR-30c-2 stem-loop
Gene family MIPF0000005; mir-30
Literature search

62 open access papers mention rno-mir-30c-2
(510 sentences)

Stem-loop
      u a    uacu       u   aca         gugaaa 
5' gag g caga    guaaaca ccu   cucucagcu      a
   ||| | ||||    ||||||| |||   |||||||||       
3' uuc c gucu    cauuugu gga   gagggucga      g
      - -    cucu       c   --a         aagaau 
Get sequence
Deep sequencing
6045107 reads, 4.22e+03 reads per million, 511 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr9: 29562376-29562459 [+]
intergenic
Database links

Mature sequence rno-miR-30c-5p

Accession MIMAT0000804
Previous IDsrno-miR-30c
Sequence

14 - 

uguaaacauccuacacucucagc

 - 36

Get sequence
Deep sequencing11978233 reads, 511 experiments
Evidence experimental; cloned [1-5], SOLiD [6]
Predicted targets

Mature sequence rno-miR-30c-2-3p

Accession MIMAT0005442
Previous IDsrno-miR-30c-2*
Sequence

54 - 

cugggagaaggcuguuuacucu

 - 75

Get sequence
Deep sequencing56128 reads, 498 experiments
Evidence experimental; cloned [4], SOLiD [6]
Predicted targets

References

1
PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
2
PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
3
4
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
5
PMID:17805466 "Cloning and identification of novel microRNAs from rat hippocampus" He X, Zhang Q, Liu Y, Pan X Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
6
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).