Stem-loop sequence rno-mir-29c-1

AccessionMI0000865 (change log)
Previous IDsrno-mir-29c
DescriptionRattus norvegicus miR-29c-1 stem-loop
Gene family MIPF0000009; mir-29
Literature search

109 open access papers mention rno-mir-29c-1
(663 sentences)

Stem-loop
   a         -  ggc           ucc       ---     u 
5'  ucucuuaca ca   ugaccgauuuc   ugguguu   cagag c
    ||||||||| ||   |||||||||||   |||||||   ||||| u
3'  gggggaugu gu   auuggcuaaag   accacga   guuuu g
   a         a  ---           uuu       ucu     u 
Get sequence
Deep sequencing
3410252 reads, 2.33e+03 reads per million, 503 experiments
Confidence Annotation confidence: high
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Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr1: 38238904-38238991 [+]
antisense
ENSRNOT00000071875 ; Mir3556b-201; exon 1
Clustered miRNAs
< 10kb from rno-mir-29c-1
rno-mir-29b-2chr1: 38238376-38238456 [+]
rno-mir-3556b-1chr1: 38238896-38239002 [-]
rno-mir-29c-1chr1: 38238904-38238991 [+]
Database links

Mature sequence rno-miR-29c-5p

Accession MIMAT0003154
Previous IDsrno-miR-29c*
Sequence

16 - 

ugaccgauuucuccugguguuc

 - 37

Get sequence
Deep sequencing32354 reads, 454 experiments
Evidence experimental; cloned [2], SOLiD [5]

Mature sequence rno-miR-29c-3p

Accession MIMAT0000803
Previous IDsrno-miR-29c
Sequence

54 - 

uagcaccauuugaaaucgguua

 - 75

Get sequence
Deep sequencing6788116 reads, 503 experiments
Evidence experimental; cloned [1-4], SOLiD [5]

References

1
PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
2
3
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4
PMID:17805466 "Cloning and identification of novel microRNAs from rat hippocampus" He X, Zhang Q, Liu Y, Pan X Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
5
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).