Stem-loop sequence rno-mir-19b-1

AccessionMI0000847 (change log)
DescriptionRattus norvegicus miR-19b-1 stem-loop
Gene family MIPF0000011; mir-19
Literature search

45 open access papers mention rno-mir-19b-1
(168 sentences)

Stem-loop
       ggu                 -  -      uc    uguau 
5' cacu   cuaugguuaguuuugca gg uuugca  cagc     a
   ||||   ||||||||||||||||| || ||||||  ||||     a
3' gugg   ggugucagucaaaacgu cc aaacgu  gucg     u
       --u                 a  u      --    ucuua 
Get sequence
Deep sequencing
155597 reads, 153 reads per million, 499 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr15: 100180464-100180550 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-19b-1
rno-mir-17-1chr15: 100179879-100179962 [+]
rno-mir-18achr15: 100180015-100180110 [+]
rno-mir-19achr15: 100180162-100180243 [+]
rno-mir-20achr15: 100180334-100180418 [+]
rno-mir-19b-1chr15: 100180464-100180550 [+]
rno-mir-92a-1chr15: 100180586-100180663 [+]
Database links

Mature sequence rno-miR-19b-1-5p

Accession MIMAT0017096
Previous IDsrno-miR-19b-1*
Sequence

16 - 

aguuuugcagguuugcauccag

 - 37

Get sequence
Deep sequencing131 reads, 93 experiments
Evidence experimental; SOLiD [4]
Predicted targets

Mature sequence rno-miR-19b-3p

Accession MIMAT0000788
Previous IDsrno-miR-19b
Sequence

54 - 

ugugcaaauccaugcaaaacuga

 - 76

Get sequence
Deep sequencing310991 reads, 499 experiments
Evidence experimental; cloned [1-3], SOLiD [4]
Predicted targets

References

1
PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
2
3
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).