Stem-loop sequence hsa-mir-381

Accession MI0000789
Symbol HGNC:MIR381
Description Homo sapiens miR-381 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
      a  c   g        u        --g   u 
uacuua ag gag uugcccuu guauauuc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagu uc cuc aacgggaa cauauaag   cag u
      g  u   g        -        gua   u
Get sequence
Deep sequencing
422 reads, 12 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr14: 101512257-101512331 [+]
sense
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; MIR381HG-001; intron 1
Clustered miRNAs
< 10kb from hsa-mir-381
hsa-mir-376c chr14: 101506027-101506092 [+]
hsa-mir-376a-2 chr14: 101506406-101506485 [+]
hsa-mir-654 chr14: 101506556-101506636 [+]
hsa-mir-376b chr14: 101506773-101506872 [+]
hsa-mir-376a-1 chr14: 101507119-101507186 [+]
hsa-mir-300 chr14: 101507700-101507782 [+]
hsa-mir-1185-1 chr14: 101509314-101509399 [+]
hsa-mir-1185-2 chr14: 101510535-101510620 [+]
hsa-mir-381 chr14: 101512257-101512331 [+]
hsa-mir-487b chr14: 101512792-101512875 [+]
hsa-mir-539 chr14: 101513658-101513735 [+]
hsa-mir-889 chr14: 101514238-101514316 [+]
hsa-mir-544a chr14: 101514995-101515085 [+]
hsa-mir-655 chr14: 101515887-101515983 [+]
hsa-mir-487a chr14: 101518783-101518862 [+]
hsa-mir-382 chr14: 101520643-101520718 [+]
hsa-mir-134 chr14: 101521024-101521096 [+]
hsa-mir-668 chr14: 101521595-101521660 [+]
hsa-mir-485 chr14: 101521756-101521828 [+]
Database links

Mature sequence hsa-miR-381-5p

Accession MIMAT0022862
Sequence

8 -  

agcgagguugcccuuuguauau

 - 29

Get sequence
Deep sequencing 23 reads, 8 experiments
Evidence experimental; SOLiD [3]
Predicted targets

Mature sequence hsa-miR-381-3p

Accession MIMAT0000736
Previous IDs hsa-miR-381
Sequence

49 -  

uauacaagggcaagcucucugu

 - 70

Get sequence
Deep sequencing 399 reads, 12 experiments
Evidence experimental; cloned [1-2], SOLiD [3]
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3
PMID:22282338 "Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs" Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L, David M, Capogrossi MC, Moles A, Felsani A, Martelli F RNA. 18:472-484(2012).