Stem-loop sequence hsa-mir-302b

Accession

MI0000772

Symbol

HGNC:MIR302B

Description

Homo sapiens miR-302b stem-loop

Gene family

MIPF0000071; mir-302

Stem-loop

     cuuca   uu          ug   u  guga 
gcucc     acu  aacauggaag  cuu cu    c
|||||     |||  ||||||||||  ||| ||    u
ugagg     uga  uuguaccuuc  gaa ga    u
     ----a   uu          gu   u  aaau 

Deep sequencing

49668 reads, 4 experiments

Genome context

• Coordinates (GRCh37.p5): chr4: 113569641-113569713 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000365316 ; RP11-148B6.1-001; intron 1

  OTTHUMT00000365318 ; RP11-148B6.1-003; intron 1

  OTTHUMT00000365316 ; RP11-148B6.1-001; intron 1

  OTTHUMT00000365318 ; RP11-148B6.1-003; intron 1

  OTTHUMT00000365316 ; RP11-148B6.1-001; intron 1

  OTTHUMT00000365318 ; RP11-148B6.1-003; intron 1

  OTTHUMT00000365317 ; RP11-148B6.1-002; intron 2

  OTTHUMT00000365317 ; RP11-148B6.1-002; intron 2

  OTTHUMT00000365317 ; RP11-148B6.1-002; intron 2

  ENST00000509938 ; RP11-148B6.1-001; intron 1

  ENST00000505215 ; RP11-148B6.1-003; intron 1

  ENST00000509938 ; RP11-148B6.1-001; intron 1

  ENST00000505215 ; RP11-148B6.1-003; intron 1

  ENST00000509938 ; RP11-148B6.1-001; intron 1

  ENST00000505215 ; RP11-148B6.1-003; intron 1

  ENST00000510655 ; RP11-148B6.1-002; intron 2

  ENST00000510655 ; RP11-148B6.1-002; intron 2

  ENST00000510655 ; RP11-148B6.1-002; intron 2

  antisense

  OTTHUMT00000365309 ; LARP7-013; intron 2

  OTTHUMT00000365309 ; LARP7-013; intron 2

  OTTHUMT00000365309 ; LARP7-013; intron 2

  OTTHUMT00000365307 ; LARP7-011; intron 3

  OTTHUMT00000365307 ; LARP7-011; intron 3

  OTTHUMT00000365307 ; LARP7-011; intron 3

  OTTHUMT00000256417 ; LARP7-001; intron 8

  OTTHUMT00000363892 ; LARP7-003; intron 8

  OTTHUMT00000256417 ; LARP7-001; intron 8

  OTTHUMT00000363892 ; LARP7-003; intron 8

  OTTHUMT00000256417 ; LARP7-001; intron 8

  OTTHUMT00000363892 ; LARP7-003; intron 8

  OTTHUMT00000363891 ; LARP7-002; intron 10

  OTTHUMT00000363891 ; LARP7-002; intron 10

  OTTHUMT00000363891 ; LARP7-002; intron 10

  ENST00000511529 ; LARP7-013; intron 2

  ENST00000511529 ; LARP7-013; intron 2

  ENST00000511529 ; LARP7-013; intron 2

  ENST00000513553 ; LARP7-011; intron 3

  ENST00000513553 ; LARP7-011; intron 3

  ENST00000513553 ; LARP7-011; intron 3

  ENST00000344442 ; LARP7-001; intron 8

  ENST00000509622 ; LARP7-003; intron 8

  ENST00000324052 ; LARP7-201; intron 8

  ENST00000344442 ; LARP7-001; intron 8

  ENST00000509622 ; LARP7-003; intron 8

  ENST00000324052 ; LARP7-201; intron 8

  ENST00000344442 ; LARP7-001; intron 8

  ENST00000509622 ; LARP7-003; intron 8

  ENST00000324052 ; LARP7-201; intron 8

  ENST00000509061 ; LARP7-002; intron 10

  ENST00000509061 ; LARP7-002; intron 10

  ENST00000509061 ; LARP7-002; intron 10

Clustered miRNAs

< 10kb from hsa-mir-302b

• hsa-mir-302b: chr4: 113569641-113569713 [-]
• hsa-mir-302c: chr4: 113569519-113569586 [-]
• hsa-mir-302a: chr4: 113569339-113569407 [-]
• hsa-mir-302d: chr4: 113569160-113569227 [-]
• hsa-mir-367: chr4: 113569030-113569097 [-]

Database links

• ENTREZGENE: 442894;MIR302B
• HGNC: 31763;MIR302B

Mature sequence hsa-miR-302b-5p

• Accession: MIMAT0000714
• Previous IDs: hsa-miR-302b*
• Sequence: 11 - acuuuaacauggaagugcuuuc - 32
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; cloned [1-2], Northern [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-302b-5p
  • MICRORNA.ORG:hsa-miR-302b-5p
  • MIRDB:hsa-miR-302b-5p
  • RNA22-HSA:hsa-miR-302b-5p
  • TARGETMINER:hsa-miR-302b-5p
  • PICTAR-VERT:hsa-miR-302b
  • PICTAR-VERT:hsa-miR-302b*

Mature sequence hsa-miR-302b-3p

• Accession: MIMAT0000715
• Previous IDs: hsa-miR-302b
• Sequence: 47 - uaagugcuuccauguuuuaguag - 69
• Deep sequencing: 49666 reads, 4 experiments
• Evidence: experimental; cloned [1-2], Northern [1]
• Validated targets:
  • TARBASE:hsa-miR-302b-3p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-302b-3p
  • MICRORNA.ORG:hsa-miR-302b-3p
  • MIRDB:hsa-miR-302b-3p
  • RNA22-HSA:hsa-miR-302b-3p
  • TARGETMINER:hsa-miR-302b-3p
  • TARGETSCAN-VERT:hsa-miR-302b
  • PICTAR-VERT:hsa-miR-302b
  • PICTAR-VERT:hsa-miR-302b*

References

1. PMID:15183728 "Human embryonic stem cells express a unique set of microRNAs" Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS, Moon SY, Kim VN, Kim KS Dev Biol. 270:488-498(2004).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).