Stem-loop sequence hsa-mir-363

Accession

MI0000764

Symbol

HGNC:MIR363

Description

Homo sapiens miR-363 stem-loop

Gene family

MIPF0000138; mir-363

Stem-loop

u   gu         ca  a         -----g   a 
 guu  cggguggau  cg ugcaauuuu      aug g
 |||  |||||||||  || |||||||||      ||| u
 caa  gucuaccua  gc acguuaaaa      uac a
c   au         ug  -         agagga   u 

Deep sequencing

35877 reads, 22 experiments

Genome context

• Coordinates (GRCh37.p5): chrX: 133303408-133303482 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-363

• hsa-mir-106a: chrX: 133304228-133304308 [-]
• hsa-mir-18b: chrX: 133304071-133304141 [-]
• hsa-mir-20b: chrX: 133303839-133303907 [-]
• hsa-mir-19b-2: chrX: 133303701-133303796 [-]
• hsa-mir-92a-2: chrX: 133303568-133303642 [-]
• hsa-mir-363: chrX: 133303408-133303482 [-]

Database links

• EMBL: AY785932;AY785932
• ENTREZGENE: 574031;MIR363
• HGNC: 32023;MIR363

Mature sequence hsa-miR-363-5p

• Accession: MIMAT0003385
• Previous IDs: hsa-miR-363*
• Sequence: 7 - cggguggaucacgaugcaauuu - 28
• Deep sequencing: 1733 reads, 10 experiments
• Evidence: experimental; cloned [2-3]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-363-5p
  • MICRORNA.ORG:hsa-miR-363-5p
  • MIRDB:hsa-miR-363-5p
  • RNA22-HSA:hsa-miR-363-5p
  • TARGETMINER:hsa-miR-363-5p

Mature sequence hsa-miR-363-3p

• Accession: MIMAT0000707
• Previous IDs: hsa-miR-363
• Sequence: 50 - aauugcacgguauccaucugua - 71
• Deep sequencing: 34144 reads, 22 experiments
• Evidence: experimental; array-cloned [1], cloned [2-3]
• Validated targets:
  • TARBASE:hsa-miR-363-3p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-363-3p
  • MICRORNA.ORG:hsa-miR-363-3p
  • MIRDB:hsa-miR-363-3p
  • RNA22-HSA:hsa-miR-363-3p
  • TARGETMINER:hsa-miR-363-3p
  • TARGETSCAN-VERT:hsa-miR-363

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).